Browser Select Tracks Snapshots Community Tracks Custom Tracks Preferences

 Search

 Search

Landmark or Region: Examples: 000052F:1,939,521..1,940,982, 000273F:1,034,766..1,043,385, 000382F, 000829F.	Annotate Restriction Sites Download Decorated FASTA File Download Sequence File Download Track Data
Data Source Cascade genome assembly Cascade haplotigs assembly Draft Cascade genome assembly Fusarium_graminearum Neurospora_crassa_10 Neurospora_crassa_12 Neurospora_crassa_transcripts Zymoseptoria_tritici_public	Scroll/Zoom:     Show 1 Mbp Show 500 kbp Show 200 kbp Show 100 kbp Show 99 kbp Show 50 kbp Show 40 kbp Show 30 kbp Show 25 kbp Show 20 kbp Show 18 kbp Show 16 kbp Show 14 kbp Show 12 kbp Show 10 kbp Show 8 kbp Show 6 kbp Show 5 kbp Show 2 kbp Show 1.462 kbp Show 1 kbp Show 200 bp Show 100 bp     Flip

 Overview

 Overview

 

 Region

 Region

 

 Details

 Details

 

  Augustus gene models  

  RepeatMasker coordinates  

Clear highlighting

<< Back to Browser Show Active Tracks Only Show Favorites Only Clear All Favorites

 Tracks

 Tracks

 

 Alignments

 Alignments

 All on All off 

NCBI hop EST alignments

TrichOME hop EST alignments

UniProt Embryophyta alignments

 General

 General

 All on All off 

3-frame translation (forward)	6-frame translation
3-frame translation (reverse)	DNA/GC Content

 Genes

 Genes

 All on All off 

Augustus gene models

 RNAseq coverage

 RNAseq coverage

 All on All off 

Cascade gland, Matthews lab	Cascade leaf, Matthews lab	Cascade stem, Henning lab
Cascade leaf, Henning lab	Cascade meristem, Henning lab

 Repeats

 Repeats

 All on All off 

RepeatMasker coordinates

 Transcripts

 Transcripts

 All on All off 

Gland transcripts, Matthews lab	Merged transcripts, Henning lab	Stem transcripts, Henning lab
Leaf transcripts, Henning lab	Merged transcripts, Matthews lab
Leaf transcripts, Matthews lab	Meristem transcripts, Henning lab

 Region

 Region

 All on All off 

GC Content

 Analysis

 Analysis

 All on All off 

Restriction Sites

Snapshots

Snapshot Name

Snapshot Timestamp [GMT]

Community Tracks

Filter: Showing 0 files.

There are no available unused public available tracks. Select "Custom Tracks" to see ones you've already added to your session.

Custom Tracks

[Help with uploading custom tracks]

There are no tracks yet.

Add custom tracks : [From text] [From a URL] [From a file]

Show grid	Image Width 450 640 800 1024	Highlight feature(s) (feature1 feature2...) Clear highlighting
Cache tracks		Highlight regions (region1:start..end region2:start..end) Clear highlighting
Show tooltips		Region Size (bp) 200000 30000 20000 10000 5000 1000

The Generic Genome Browser. For questions about the data at this site, please contact its webmaster. For support of the browser software only, send email to gmod-gbrowse@lists.sourceforge.net or visit the GMOD Project web pages.